LaTeX and BibTeX
- betterbib [link]: maintain your BibTeX files by comparing them with online sources and correcting whatever entries are found faulty
- bibclean [link]: prettyprint and syntax check BibTeX and Scribe bibliography data base files
- JabRef [link]: graphical-user interface for reading, writing, and searching bib files
Programming
- "Software Carpentry: Teaching Lab Skills for Scientific Computing" [link] has many helpful lessons [link]. Note especially the tutorials Version Control with Git [link] and Programming with Python [link].
- [Merali2010oct] Merali, Z. "Computational Science: ...Error", Nature, 2010, 467, 775 - 777 [10.1038/467775a].
- [Wilson2014jan] Wilson, G.; Aruliah, D. A.; Brown, C. T.; Chue Hong, N. P.; Davis, M.; Guy, R. T.; Haddock, S. H. D.; Huff, K. D.; Mitchell, I. M.; Plumbley, M. D.; Waugh, B.; White, E. P.; Wilson, P. & Eisen, J. A. "Best Practices for Scientific Computing", PLoS Biol, 2014, 12, e1001745 [10.1371/journal.pbio.1001745]
Reproducible Research
- John Marohn's public research notebook [link]
- Git [link]. Version control, the lab notebook of the digital world!
- Tutorial: "Version Control with Git", the Software Carpentry Foundation [link]
- GitHub [https://github.com/]
- Corinne E. Isaac [link]
- Hoang L. Nguyen [link]
- Ryan P. Dwyer [link]
- John A. Marohn [link]
- FreqDemod [Python package][source code][documentation]
- Zenodo [https://zenodo.org/]. Store data and assign it a doi.
